PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011356
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 184aa    MW: 20548.1 Da    PI: 7.8653
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58664678PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543.1e-1735122292
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                fk     + + ++++++p +f+ +  g++++ + +t++++ g++W++ ++  +k   ry+l++ W++F + n+L egD +vFk+++++++ l
  Lsa011356  35 FKMI--ISQGHKCCMRVPSEFV-RLAGIEAGRRSITMRNPAGKEWQMSFRSeSKVCTRYYLSSVWSDFWRLNNLSEGDECVFKFIKNEDK-L 122
                5555..67788899********.6666778889****************775666666**************************997655.3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.75832130IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-1633124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1533120IPR015300DNA-binding pseudobarrel domain
CDDcd100176.77E-1633122No hitNo description
SMARTSM010191.5E-934130IPR003340B3 DNA binding domain
PfamPF023629.6E-1635124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
XGDHGVGRDG DKEDDEDDCG EIGGDDDDGV GDPFFKMIIS QGHKCCMRVP SEFVRLAGIE  60
AGRRSITMRN PAGKEWQMSF RSESKVCTRY YLSSVWSDFW RLNNLSEGDE CVFKFIKNED  120
KLLLETITKK HPAGKVQAAE VPPTVVLKRP VGRPPRVEVE KEVRAKKPAG KVQAAEVRKP  180
VGRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.18e-09B3 family protein